-
Notifications
You must be signed in to change notification settings - Fork 17
Open
Description
When using the aplot package (version 0.2.0), the following error message appears when using the function "insert_left":
Error in if (zero_range(as.numeric(limits))) { :
missing value where TRUE/FALSE needed
In addition: Warning message:
In zero_range(as.numeric(limits)) : NAs introduced by coercion
We have a matrix to plot heatmap like this:
And then we use the following code to generate the cluster tree:
dd <- dist(plotdata1, method = "euclidean")
hc <- hclust(dd, method = "ward.D2")
library(ggdendro)
pa=ggdendrogram(hc,theme_dendro = F)+
coord_flip()+
scale_y_reverse()+
theme_void()
Then the heatmap plot was plotted using the following code:
plotdata1 %>% ggplot(aes(x=condition,y=celltype))+
geom_tile(aes(fill = value),color = tile_color)+
scale_y_discrete(expand = c(0,0),position = "right")+
scale_x_discrete(expand = c(0,0))+
theme_bw()+
theme(
panel.grid = element_blank(),
axis.title = element_blank(),
axis.ticks.length = unit(0.15,"cm"),
axis.text.y.right = element_text(size = 12,colour = "black"),
axis.text.x.bottom = element_text(size = 12,colour = "black",angle = 0,hjust = 0.5)
)
And if I want to combine the two plot, Error was occured:
>insert_left(pb,pa,width = relative_width)
Error in if (zero_range(as.numeric(limits))) { :
missing value where TRUE/FALSE needed
In addition: Warning message:
In zero_range(as.numeric(limits)) : NAs introduced by coercionHowever, aplot (version 0.1.8) works fine whereas vesion 0.1.9 and 0.2.0 can't. So maybe it's necessary to solve this problem in the next vesion.
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
No labels