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This PR switches to using
pixifor environment creation and management andrattler-buildfor building conda packages.Additional updates include:
perturbed_systemoption. When a user passes in a system object directly, e.g. when scriptingsomd2rather than using the CLI, we now stream the system to the output directory and store the path to the file in the YAML config file. This allows the system to be reconstructed correctly when running from a restart.somd2via scripts with custom schedules. As we formalise robust schedules, these can be added as supported keywords, which will make the config more readable.