Docs: RF3 README update and moving RF3 examples#216
Merged
rclune merged 4 commits intoproductionfrom Feb 27, 2026
Merged
Conversation
I updated the RF3 README for installation instructions that matched the RFD3 installation instructions. For the first example, I improve the instructions for running and fixed the output file descriptions to match what is now output by running the example. I commented out the 'Templating a Small Molecule' section because many of the files in that section were not present in the repository. The rest of the changes were mostly typo fixes. I moved the examples from `foundry/docs/releases` to `foundry/models/rf3/docs` to match the organization of RFD3. The changes made to the JSON files just reflect this change of location.
woodsh17
reviewed
Feb 27, 2026
| > [!NOTE] | ||
| > **Pairwise Contact Support**: The model was trained with random pairwise contacts; our inference API could be further extended to support specification of individual (token-level) pairwise contacts in the future. Please let us know if this would be helpful for your usecase and we can prioritize appropriately. | ||
|
|
||
| <!-- THE BELOW WAS COMMENTED OUT DUE TO MISSING FILES |
Member
There was a problem hiding this comment.
Is there someone we should reach out to about this section?
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
I updated the RF3 README for installation instructions that matched the RFD3 installation instructions. For the first example, I improve the instructions for running and fixed the output file descriptions to match what is now output by running the example. I commented out the 'Templating a Small Molecule' section because many of the files in that section were not present in the repository. The rest of the changes were mostly typo fixes.
I moved the examples from
foundry/docs/releasestofoundry/models/rf3/docsto match the organization of RFD3. The changes made to the JSON files just reflect this change of location.