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Installation FAQ: created a document to specify any common installation issues and questions. Should be continuously updated based on logged issues and questions. Not specific to any model. RFD3: - changed the checkpoint files specified in the examples to rfd3_latest.ckpt - updated information in input.md to clarify information based on recent issues that had been submitted
RF3 and MPNN: folders, index files, and symlinks were created in order to provide space for eventual RF3 and MPNN docs. Several small changes in the RFD3 README to improve readability and add a pointer to the PPI tutorial as a starting point for someone new to RFdiffusion tools.
…index Made changes based on edits from Saman, added images, and created zip file containing sample outputs for an enzyme design tutorial. I am waiting on edits for the NA binder design tutorial, so for now I have removed it from the documentation index.
This tutorial is being created in collaboration with Raktim Mitra.
Collaborator
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Hi Rachel, looks awesome! Thank you! If you think it would be cool, we could generate ray traced images for the pictures ? If you saved some of these pymol session files we can do that easily. lmk what you think! |
timkartar
reviewed
Feb 28, 2026
| The JSON file has many details about your diffusion run, including the options in the JSON file you created. The compressed CIF file contains information about the final diffused structure that you can easily visualize with tools like PyMOL. | ||
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| Your results should look something like this: | ||
| ```{figure} ../.assets/na_tutorial/example_output.png |
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When I look at the md file on the PR branch, the images do not show up. maybe something like below is needed ?
<div align="center">
<img src="../.assets/na_tutorial/example_output.png" alt="Protein-DNA complex prediction" width="400">
</div>
timkartar
reviewed
Feb 28, 2026
| "select_hbond_donor": {"D31-32":"N6"} | ||
| ``` | ||
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| (na-unfix-sequence)= |
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stray text leftover ? or something is funny with formatting here ? . shows up like below
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This tutorial was created with the help of Raktim Mitra.