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RuleWorld

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  1. bionetgen bionetgen Public

    Rule-based modeling framework

    Perl 66 24

  2. BNGTutorial BNGTutorial Public

    Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

    15 3

  3. nfsim nfsim Public

    Forked from msneddon/nfsim

    A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

    Makefile 14 10

  4. rulebender rulebender Public

    Rule-Based Modeling and Simulation Gui

    C 12 7

  5. ptempest ptempest Public

    PTempEst: Parallel Tempering for Estimation

    MATLAB 5 5

  6. PyBioNetGen PyBioNetGen Public

    A simple CLI for BioNetGen

    Python 5 5

Repositories

Showing 10 of 24 repositories
  • bngplayground Public
    RuleWorld/bngplayground’s past year of commit activity
    TypeScript 0 0 0 0 Updated Feb 25, 2026
  • bionetgen Public

    Rule-based modeling framework

    RuleWorld/bionetgen’s past year of commit activity
    Perl 66 MIT 24 67 0 Updated Feb 24, 2026
  • nfsim Public Forked from msneddon/nfsim

    A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

    RuleWorld/nfsim’s past year of commit activity
    Makefile 14 MIT 19 15 0 Updated Feb 23, 2026
  • webng Public Forked from ASinanSaglam/webng

    A set of tools to simplify the weighted ensemble sampling of BioNetGen rule-based simulations.

    RuleWorld/webng’s past year of commit activity
    Jupyter Notebook 0 4 5 0 Updated Jun 17, 2025
  • PyBioNetGen Public

    A simple CLI for BioNetGen

    RuleWorld/PyBioNetGen’s past year of commit activity
    Python 5 MIT 5 11 0 Updated Apr 24, 2025
  • BNGTutorial Public

    Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

    RuleWorld/BNGTutorial’s past year of commit activity
    15 3 0 0 Updated May 30, 2023
  • BNG_vscode_extension Public
    RuleWorld/BNG_vscode_extension’s past year of commit activity
    JavaScript 4 MIT 2 6 0 Updated Apr 20, 2023
  • atomizer Public

    RNM to RBM translation project.

    RuleWorld/atomizer’s past year of commit activity
    Python 3 5 3 7 Updated Jul 6, 2022
  • RuleHub Public

    A repository of rule-based models. Could this be the start of something great?

    RuleWorld/RuleHub’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Sep 19, 2021
  • ptempest Public

    PTempEst: Parallel Tempering for Estimation

    RuleWorld/ptempest’s past year of commit activity
    MATLAB 5 GPL-3.0 5 0 0 Updated Oct 27, 2020
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