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@ccb-hms

Core for Computational Biomedicine

Harvard Medical School

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  1. ontology-mapper ontology-mapper Public

    a tool for mapping free-text descriptions of entities to ontology terms

    Python 24 4

  2. scDiagnostics scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data

    R 11 2

  3. BioPlex BioPlex Public

    R-side access to protein-protein interaction data from Gygi and Harper labs

    R 8 2

  4. nhanes-database nhanes-database Public

    Database facilities for performant working with CDC's National Health and Nutrition Examination Survey (NHANES) data

    R 6 5

  5. HuBMAPy HuBMAPy Public

    A package to query the HuBMAP Human Reference Atlas Ontology

    Python 1 3

  6. MerfishData MerfishData Public

    Collection of public MERFISH datasets

    R 1 2

Repositories

Showing 10 of 98 repositories
  • perio-bugs Public

    Database of published microbial signatures of differential abundance in periodontal health and disease (Feres lab, HSDM)

    ccb-hms/perio-bugs’s past year of commit activity
    R 0 0 0 0 Updated Feb 24, 2026
  • computervision Public

    The CCB Computer Vision Repository

    ccb-hms/computervision’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Feb 22, 2026
  • LLMTools-HMS Public

    A repository for getting started with LLM resources at Harvard Medical School

    ccb-hms/LLMTools-HMS’s past year of commit activity
    Jupyter Notebook 1 CC-BY-4.0 0 0 0 Updated Feb 20, 2026
  • cadence Public

    A project for creating meeting schedules.

    ccb-hms/cadence’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Feb 15, 2026
  • scConform Public

    Uncertainty quantification for cell type annotation using conformal inference

    ccb-hms/scConform’s past year of commit activity
    R 5 0 2 0 Updated Feb 12, 2026
  • scDiagnosticsManuscript Public

    Reproducible analyses for scDiagnostics manuscript

    ccb-hms/scDiagnosticsManuscript’s past year of commit activity
    R 0 MIT 1 0 0 Updated Feb 2, 2026
  • BioPlex Public

    R-side access to protein-protein interaction data from Gygi and Harper labs

    ccb-hms/BioPlex’s past year of commit activity
    R 8 2 4 0 Updated Jan 28, 2026
  • git_backed_test Public
    ccb-hms/git_backed_test’s past year of commit activity
    0 0 0 0 Updated Jan 28, 2026
  • scDiagnostics Public

    Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data

    ccb-hms/scDiagnostics’s past year of commit activity
    R 11 2 7 0 Updated Jan 25, 2026
  • ProteinGymPy Public

    Programmatic access to ProteinGym datasets in Python

    ccb-hms/ProteinGymPy’s past year of commit activity
    Python 0 CC-BY-4.0 0 6 2 Updated Dec 9, 2025
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