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1. RGraphSpace RGraphSpace Public

   A lightweight package for representing large igraph objects in a normalized coordinate system

   R 2

2. PathwaySpace PathwaySpace Public

   PathwaySpace is an R package that creates landscape images from graphs containing vertices (nodes), edges (lines), and a signal associated with the vertices.

   R 3 2

3. RedeR RedeR Public

   RedeRis a stand-alone Java application for interactive visualization and manipulation of nested networks.

4. RTN RTN Public

   Reconstruction of Transcriptional regulatory Networks and analysis of regulons

5. GeneBridge GeneBridge Public

   Rooting Orthologous Genes in Large-Scale Evolutionary Analysis.

   R 7 2

6. TreeAndLeaf TreeAndLeaf Public

   An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.

   15 3