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  1. zarp zarp Public

    The Zavolab Automated RNA-seq Pipeline

    Python 36 4

  2. htsinfer htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-Seq data

    Python 15 22

  3. polyAsite_workflow polyAsite_workflow Public

    Pipeline for the processing of 3' end sequencing libraries

    Python 9 2

  4. PAQR_KAPAC PAQR_KAPAC Public

    scripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site…

    Python 8 4

  5. Dockerfiles Dockerfiles Public

    Dockerfile repository of the Zavolan Lab

    Perl 8 2

  6. bindz-rbp bindz-rbp Public

    RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

    Roff 8

Repositories

Showing 10 of 43 repositories
  • mirflowz Public

    Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.

    zavolanlab/mirflowz’s past year of commit activity
    Python 6 MIT 1 21 1 Updated Feb 16, 2026
  • ucsc_tracks Public

    This repository is dedicated to store the tracks for visualization in UCSC Genome Browser, from various studies

    zavolanlab/ucsc_tracks’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 10, 2026
  • zarp Public

    The Zavolab Automated RNA-seq Pipeline

    zavolanlab/zarp’s past year of commit activity
    Python 36 Apache-2.0 4 12 (1 issue needs help) 0 Updated Jan 29, 2026
  • primer_probe_design Public

    The repository contains the data, UCSC trackhub, and tools for PCR primer and probe design in the Zavolan lab

    zavolanlab/primer_probe_design’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 29, 2025
  • zarp-cli Public

    A user-friendly command-line interface for the ZARP RNA-seq analysis workflow

    zavolanlab/zarp-cli’s past year of commit activity
    Python 6 Apache-2.0 1 9 1 Updated Aug 26, 2025
  • rcrunch_ENCODE_RBPs_trackhub Public

    This repository contains the files for the TrackHub based on the RCRUNCH processing of ENCODE RBP eCLIP data

    zavolanlab/rcrunch_ENCODE_RBPs_trackhub’s past year of commit activity
    0 0 0 0 Updated May 9, 2025
  • IPA-immune Public
    zavolanlab/IPA-immune’s past year of commit activity
    Python 0 Apache-2.0 0 1 0 Updated Jan 7, 2025
  • htsinfer Public

    Infer metadata for your downstream analysis straight from your RNA-Seq data

    zavolanlab/htsinfer’s past year of commit activity
    Python 15 Apache-2.0 22 6 0 Updated Nov 20, 2024
  • SCINPAS Public

    Single Cell Identification of Novel PolyA Sites.

    zavolanlab/SCINPAS’s past year of commit activity
    Python 4 Apache-2.0 0 4 0 Updated Sep 18, 2024
  • polyAsite_Atlas_3 Public

    The repository contains the data related to polyAsite Atlas v3 database and paper

    zavolanlab/polyAsite_Atlas_3’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 11, 2024

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